chr2 : 172,549,606 172,550,190
584 bp 15 TFs 2 linked genes
This 584 bp open chromatin element is linked to PDK1 and ITGA6-AS1 and is bound by 15 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PDK1 5.8 kb Proximal Proximity
ITGA6-AS1 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:172,544,606 – 172,555,190
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 395 bp overlap
ChIP DE DE-FOXA2-2 390 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 237 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 584 bp overlap
ChIP DE DE-GATA4-2 584 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 469 bp overlap
ChIP DE DE-GATA6-2 584 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 465 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 584 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 462 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 584 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 175 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 162 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 367 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 374 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 346 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 303 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 299 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 337 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 357 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 200 bp overlap
NANOG 5 datasets
ChIP GM23338 ENCFF065NZG 295 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 133 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 303 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 337 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 343 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 279 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE76181.RUNX1.Jurkat 173 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 584 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 198 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 584 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 584 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 455 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 584 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 584 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 257 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 375 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 227 bp overlap