chr2 : 50,872,643 – 50,872,813
170 bp 23 TFs 0 linked genes
This 170 bp open chromatin element has no linked target genes and is bound by 23 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:50,867,643 – 50,877,813
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
CTCF 142 datasets
ChIP 22Rv1 ENCFF466OXN 170 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 170 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 170 bp overlap
ChIP AG04450 ENCFF116DJL 170 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 170 bp overlap
ChIP BE2C ENCFF757SRF 170 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 158 bp overlap
ChIP Caco-2 ENCFF753NZV 170 bp overlap
ChIP Caco-2 ENCFF753NZV 105 bp overlap
ChIP Caco-2 ENCFF934QYS 170 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 168 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 170 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 115 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 170 bp overlap
ChIP GM23338 ENCFF531QOI 170 bp overlap
ChIP GM23338 ENCFF772DML 117 bp overlap
ChIP H1 ENCFF230QSV 159 bp overlap
ChIP H1 ENCFF414GZI 170 bp overlap
ChIP H1 ENCFF764RHO 124 bp overlap
ChIP H9 ENCFF152GTF 170 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 170 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 170 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 170 bp overlap
ChIP HAP1_SCC4KO GSE94992.CTCF.HAP1_SCC4KO 170 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 170 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 170 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 170 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 170 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 170 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 170 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 170 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 170 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 170 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 170 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 170 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 170 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 170 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 170 bp overlap
ChIP HCT116 ENCFF209YMI 170 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 152 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 163 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 113 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 102 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 170 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 128 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 142 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 134 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 149 bp overlap
ChIP K-562_8004 GSE131349.CTCF.K-562_8004 147 bp overlap
ChIP K-562_CRISPRi_N4293 GSE131349.CTCF.K-562_CRISPRi_N4293 115 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 153 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 170 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 170 bp overlap
ChIP Loucy ENCFF359TVQ 170 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 170 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 170 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 170 bp overlap
ChIP MCF-10CA1a GSE98551.CTCF.MCF-10CA1a 170 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 170 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 170 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 170 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 170 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 170 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 170 bp overlap
ChIP RWPE2 ENCFF911IEE 170 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 170 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 92 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 170 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 164 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 170 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 113 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 153 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 170 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 170 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 170 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 137 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 170 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 152 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 161 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 170 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 170 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 145 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 170 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 168 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 134 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 145 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 153 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 170 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 152 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 170 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 157 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 159 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 170 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 170 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 164 bp overlap
ChIP endodermal cell ENCFF471YCZ 170 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 170 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 170 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 170 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 170 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 170 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 158 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 170 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 170 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 170 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 170 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 170 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 170 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 170 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 102 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 170 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 144 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 170 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 170 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 139 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 143 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 162 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 162 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 138 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 148 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 170 bp overlap
ChIP keratinocyte ENCFF046PBT 163 bp overlap
ChIP keratinocyte ENCFF291YDC 151 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 170 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 129 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 86 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 164 bp overlap
ChIP liver_right-lobe-of ENCSR911GFJ.CTCF.liver_right-lobe-of 170 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 170 bp overlap
ChIP neural progenitor cell ENCFF420RBO 170 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 170 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 170 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 170 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 170 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 170 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 170 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 170 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 170 bp overlap
ChIP right lobe of liver ENCFF250KSY 170 bp overlap
ChIP right lobe of liver ENCFF956UTA 170 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 170 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Pparg::Rxra 1 dataset
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
RAD21 14 datasets
ChIP H1 ENCFF698EWO 121 bp overlap
ChIP H1 ENCFF967OJF 170 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 170 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 170 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 170 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 170 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 145 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 170 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-060m-Flavo-000m 170 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 170 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 170 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 166 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 113 bp overlap
ChIP liver ENCFF522JHE 142 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SMC1 2 datasets
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 170 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 170 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 170 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 170 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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