chr21 : 34,605,963 34,606,314
351 bp 23 TFs 2 linked genes
This 351 bp open chromatin element is linked to ENSG00000288711 and RCAN1 and is bound by 23 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000288711 8.6 kb Proximal Proximity
RCAN1 8.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr21:34,600,963 – 34,611,314
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
AR 16 datasets
ChIP LNCaP GSE110655.AR.LNCaP 225 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 351 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 127 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 163 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 118 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 139 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 251 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 281 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 219 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 269 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 237 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 137 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 351 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 341 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 341 bp overlap
ChIP VCaP_siNON-EtOH GSE122572.AR.VCaP_siNON-EtOH 185 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 110 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 349 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 323 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 248 bp overlap
CTCF 5 datasets
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 246 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 138 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 351 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 351 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 214 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 55 bp overlap
ESR1 3 datasets
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 143 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 171 bp overlap
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 168 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 321 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 244 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 213 bp overlap
FOXA1 15 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 292 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 164 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.FOXA1.LNCaP_1F5_SIFOXA1 148 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 242 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 208 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 176 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 314 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 187 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 153 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 197 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 234 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 237 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 238 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 174 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 212 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 351 bp overlap
ChIP DE DE-FOXA2-2 351 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 198 bp overlap
GATA2 3 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 278 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 255 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 213 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 351 bp overlap
ChIP DE DE-GATA4-2 351 bp overlap
ChIP foregut GSE117136.GATA4.foregut 350 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 262 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 351 bp overlap
ChIP DE DE-GATA6-2 351 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 351 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 351 bp overlap
ChIP foregut GSE117136.GATA6.foregut 351 bp overlap
HOXB13 5 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 292 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 81 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 144 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 169 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 303 bp overlap
MZF1 1 dataset
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
OLIG2 2 datasets
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 172 bp overlap
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 182 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 315 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 351 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 280 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 323 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 250 bp overlap
ChIP K562 ENCFF059YCJ 351 bp overlap
ZBTB11 2 datasets
ChIP HEK293 ENCFF262GZJ 76 bp overlap
ChIP HEK293 ENCSR882ZTS.ZBTB11.HEK293 222 bp overlap