chr19 : 46,696,102 46,696,440
338 bp 17 TFs 1 linked gene
This 338 bp open chromatin element is linked to PRKD2 and is bound by 17 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRKD2 900 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:46,691,102 – 46,701,440
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 227 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 274 bp overlap
ChIP DE DE-GATA4-2 338 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 281 bp overlap
ChIP DE DE-GATA6-2 338 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 338 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 338 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 265 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 338 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 338 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 312 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 195 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 338 bp overlap
MLX 1 dataset
ChIP K562 ENCFF141SFO 262 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 203 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 338 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 338 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 259 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 338 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 331 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 338 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 328 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 338 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 338 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 286 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 338 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 338 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 189 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 150 bp overlap
ZNF121 1 dataset
ChIP HEK293 ENCFF839FUF 67 bp overlap