chr19 : 46,278,494 46,279,057
563 bp 15 TFs 4 linked genes
This 563 bp open chromatin element is linked to 4 target genes and is bound by 15 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
HIF3A 18.4 kb Distal Multiome
PPP5C 68.5 kb Distal Multiome
CCDC8 134.9 kb Distal Multiome
PPP5D1P 322.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:46,273,494 – 46,284,057
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 150 bp overlap
ChIP BLaER1 ENCFF274GAT 156 bp overlap
ChIP BLaER1 ENCFF335XTP 186 bp overlap
ChIP BLaER1 ENCFF364PUR 135 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 243 bp overlap
EZH2 1 dataset
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 95 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 278 bp overlap
ChIP DE DE-FOXA2-2 251 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 420 bp overlap
ChIP DE DE-GATA4-2 457 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 361 bp overlap
ChIP DE DE-GATA6-2 502 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 371 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 469 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 272 bp overlap
HDAC1 1 dataset
ChIP PC-3 GSE147455.HDAC1.PC-3 63 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 253 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 250 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 237 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE115764.PAX5.NALM-6 278 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 259 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 281 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 272 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 316 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 422 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 304 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 563 bp overlap