chr19 : 42,403,617 42,404,042
425 bp 20 TFs 1 linked gene
This 425 bp open chromatin element is linked to LIPE-AS1 and is bound by 20 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LIPE-AS1 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:42,398,617 – 42,409,042
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 208 bp overlap
BRD4 4 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 292 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 232 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 250 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 338 bp overlap
CTCF 1 dataset
ChIP HT-1080 GSE135580.CTCF.HT-1080 262 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 298 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 294 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 191 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 319 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 369 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 257 bp overlap
ChIP DE DE-GATA6-2 375 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 248 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 276 bp overlap
MAX 3 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 288 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 425 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 402 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 396 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 249 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 267 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 409 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 425 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 425 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 387 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 357 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 425 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 425 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 425 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 174 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 378 bp overlap
ZNF121 2 datasets
ChIP HEK293 ENCFF839FUF 130 bp overlap
ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 81 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 204 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 186 bp overlap
ZSCAN16 3 datasets
ChIP HEK293 ENCFF533NFT 352 bp overlap
ChIP HEK293 ENCSR864VJE.ZSCAN16.HEK293 403 bp overlap
ChIP HEK293 GSE76494.ZSCAN16.HEK293 246 bp overlap