chr19 : 17,397,300 17,397,562
262 bp 15 TFs 4 linked genes
This 262 bp open chromatin element is linked to 4 target genes and is bound by 15 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
CCDC194 3.1 kb Proximal Proximity
BST2 8.0 kb Proximal Proximity
BISPR 8.1 kb Proximal Proximity
MVB12A 8.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:17,392,300 – 17,402,562
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 77 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 262 bp overlap
ChIP DE DE-FOXA2-2 262 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 262 bp overlap
ChIP DE DE-GATA4-2 262 bp overlap
ChIP foregut GSE117136.GATA4.foregut 262 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 262 bp overlap
ChIP DE DE-GATA6-2 262 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 262 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 262 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 74 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 101 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 78 bp overlap
RELA 1 dataset
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.RELA.HeLa-B2_P65KD_TA_TNFA 100 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 220 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 262 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 262 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 262 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 222 bp overlap
SMAD5 1 dataset
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 83 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 262 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 262 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 91 bp overlap