DE-2

DE-2.4

Submodule 39 genes

Microtubule dynamics and protein trafficking regulation

This module contains 39 genes including SPAST, KRIT1, NCK1, USP8, and KDM5A, with enrichment in microtubule organization, intracellular trafficking, and protein modification. Knockdown of SOX11 activates this module. No repressing transcription factors were identified for this module.

Notable genes: SPAST KRIT1 NCK1 USP8 KDM5A NEK9 PIK3C2B PEX7 Top TFs: SOX11

TF Regulatory Network

Direction indicates the effect of TF knockdown on this submodule (↑ = KD upregulates; ↓ = KD downregulates).

Evidence: Direction: Max binding-only shown:
Perturbation + Binding
Perturbation only
Binding only
TF Dir NES #gRNA padj Bind OR

Enriched Terms

GO terms and pathway annotations enriched in this gene set (g:Profiler).


Module Genes (39)

All genes assigned to this co-expression submodule.

Gene Type Publications

Local co-expression graph for member genes built from Hotspot z-scores. Adjust the z-score threshold and repulsion sliders to explore the neighbourhood.

Gene Co-expression Network

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Low
High z