chr1 : 238,119,203 – 238,119,344
141 bp 10 TFs 0 linked genes
This 141 bp open chromatin element has no linked target genes and is bound by 10 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:238,114,203 – 238,124,344
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
10 transcription factors
Source
Cell type
CTCF 101 datasets
ChIP 22Rv1 ENCFF466OXN 141 bp overlap
ChIP 22Rv1 ENCFF466OXN 141 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 141 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 141 bp overlap
ChIP 81-3 ERP002246.CTCF.81-3 134 bp overlap
ChIP A-375 GSE128346.CTCF.A-375 122 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 115 bp overlap
ChIP AG09309 ENCFF478XPS 141 bp overlap
ChIP C4-2B ENCFF821XVN 141 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 141 bp overlap
ChIP D721Med ENCFF513FYD 141 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 141 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 111 bp overlap
ChIP GM12872 ENCFF697BYI 141 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 122 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 139 bp overlap
ChIP GM12878 ENCFF511URZ 141 bp overlap
ChIP GM12878 ENCFF635MMB 141 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 141 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 141 bp overlap
ChIP GM13976 ENCFF896BYT 106 bp overlap
ChIP GM23338 ENCFF531QOI 141 bp overlap
ChIP GM23338 ENCFF772DML 141 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 141 bp overlap
ChIP H1 ENCFF414GZI 141 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 141 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 141 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 141 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 110 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 141 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 141 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 141 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 141 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 141 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 141 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 141 bp overlap
ChIP HFFc6 ENCFF005CJI 141 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 141 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 141 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 141 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 141 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 109 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 120 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 97 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 106 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 141 bp overlap
ChIP LNCAP ENCFF223HIG 141 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 141 bp overlap
ChIP MCF-7 ENCFF198DQX 141 bp overlap
ChIP MCF-7 ENCFF414SZG 137 bp overlap
ChIP MCF-7 ENCFF494VXA 141 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 129 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 141 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 141 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 105 bp overlap
ChIP NCI-H929 ENCFF305JAB 141 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 141 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 141 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 141 bp overlap
ChIP PC-3 ENCFF487TUI 141 bp overlap
ChIP PC-3 ENCFF487TUI 141 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 141 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 97 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 121 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 141 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 141 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 141 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 141 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 141 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.CTCF.THP-1_PMA_Dex-6h 141 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 141 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 141 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 141 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 89 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 141 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 141 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 141 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 141 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 141 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 141 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 141 bp overlap
ChIP body of pancreas ENCFF798MEO 141 bp overlap
ChIP endodermal cell ENCFF471YCZ 141 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 137 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 141 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 128 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 88 bp overlap
ChIP islet ERP004003.CTCF.islet 139 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 100 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 141 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 141 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 137 bp overlap
ChIP neural progenitor cell ENCFF420RBO 141 bp overlap
ChIP neural progenitor cell ENCFF420RBO 100 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 141 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 125 bp overlap
ChIP placenta ENCFF029PHY 141 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 133 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 141 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 141 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 115 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 96 bp overlap
RAD21 19 datasets
ChIP GM12878 ENCFF101UQZ 141 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 138 bp overlap
ChIP H1 ENCFF698EWO 141 bp overlap
ChIP H1 ENCFF967OJF 141 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 141 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 141 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 141 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 130 bp overlap
ChIP T-47D GSE111923.RAD21.T-47D 141 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.RAD21.T-47D_NaCl-isotonic-triptolide 141 bp overlap
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 141 bp overlap
ChIP THP-1_PMA_Dex-0h GSE103477.RAD21.THP-1_PMA_Dex-0h 141 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.RAD21.THP-1_PMA_Dex-6h 141 bp overlap
ChIP THP-1_PMA_IFNb-0h GSE103477.RAD21.THP-1_PMA_IFNb-0h 141 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 141 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 101 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 141 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 141 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 141 bp overlap
SMC1 1 dataset
ChIP HAP1 GSE94992.SMC1.HAP1 68 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 95 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 95 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 131 bp overlap
TEAD4 1 dataset
ChIP MCF-7 ENCSR000BUO.TEAD4.MCF-7 65 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 105 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 106 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 76 bp overlap
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