chr13 : 36,338,321 36,338,886
565 bp 14 TFs 2 linked genes
This 565 bp open chromatin element is linked to SPART-AS1 and SPART and is bound by 14 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SPART-AS1 7.5 kb Proximal Proximity
SPART 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:36,333,321 – 36,343,886
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
14 transcription factors
Source
Cell type
CTCF 4 datasets
ChIP GM04648 GSE148179.CTCF.GM04648 65 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 64 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 86 bp overlap
ChIP endodermal cell ENCFF471YCZ 247 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 493 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 436 bp overlap
ChIP DE DE-FOXA2-2 435 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 565 bp overlap
ChIP DE DE-GATA4-2 565 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 504 bp overlap
ChIP DE DE-GATA6-2 565 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 565 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 565 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 565 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 460 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 565 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 437 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 364 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 427 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 435 bp overlap
NANOG 3 datasets
ChIP WA09 GSE105028.NANOG.WA09 189 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 249 bp overlap
ChIP hESC GSE18292.NANOG.hESC 140 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 550 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 565 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 565 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 563 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 565 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 548 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 534 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 376 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 565 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 263 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 342 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 123 bp overlap