chr1 : 194,538,577 – 194,538,829
252 bp 13 TFs 0 linked genes
This 252 bp open chromatin element has no linked target genes and is bound by 13 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:194,533,577 – 194,543,829
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 143 bp overlap
BRD4 1 dataset
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 207 bp overlap
CTCF 132 datasets
ChIP 22Rv1 ENCFF466OXN 252 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 252 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 142 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 252 bp overlap
ChIP A673 ENCFF123WOM 252 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 174 bp overlap
ChIP BE2C ENCFF757SRF 252 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 175 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 137 bp overlap
ChIP D721Med ENCFF513FYD 157 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 160 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 179 bp overlap
ChIP GM23338 ENCFF531QOI 152 bp overlap
ChIP GM23338 ENCFF772DML 119 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 219 bp overlap
ChIP H1 ENCFF764RHO 232 bp overlap
ChIP H54 ENCFF255TVO 179 bp overlap
ChIP H9 ENCFF152GTF 233 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 198 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 217 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 165 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 218 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 208 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 136 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 127 bp overlap
ChIP HCT116 ENCFF209YMI 188 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 54 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 145 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 69 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 115 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 191 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 89 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 89 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 192 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCFF626XQK 189 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 106 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 177 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 210 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 184 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 165 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 204 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 190 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 128 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 241 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 252 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 177 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 250 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 252 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 200 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 132 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 177 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 127 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 163 bp overlap
ChIP Loucy ENCFF359TVQ 252 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 217 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 219 bp overlap
ChIP MCF-7 ENCFF139NQI 242 bp overlap
ChIP MCF-7 ENCFF162GNE 227 bp overlap
ChIP MCF-7 ENCFF198DQX 209 bp overlap
ChIP MCF-7 ENCFF210JUZ 252 bp overlap
ChIP MCF-7 ENCFF494VXA 209 bp overlap
ChIP MCF-7 ENCFF954TUV 190 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 216 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 230 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 162 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 157 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 155 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 161 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 219 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 252 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 250 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 252 bp overlap
ChIP MM.1S ENCFF869JMQ 232 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 169 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 203 bp overlap
ChIP NCI-H929 ENCFF305JAB 166 bp overlap
ChIP NCI-H929 ENCFF305JAB 196 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 252 bp overlap
ChIP OCI-LY1 ENCFF455ESK 252 bp overlap
ChIP OCI-LY1 ENCFF455ESK 204 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 204 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 252 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 252 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 247 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 192 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 214 bp overlap
ChIP RWPE2 ENCFF911IEE 252 bp overlap
ChIP RWPE2 ENCFF911IEE 252 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 102 bp overlap
ChIP SK-N-SH ENCFF731NJX 227 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 252 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 142 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 103 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 113 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 252 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 252 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 157 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 252 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 252 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 180 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 179 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 157 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 173 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 173 bp overlap
ChIP VCaP ENCFF858YQT 252 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 230 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 218 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 123 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 119 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 245 bp overlap
ChIP chondrocyte ENCFF134ORZ 198 bp overlap
ChIP chondrocyte ENCFF134ORZ 247 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 135 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 155 bp overlap
ChIP endodermal cell ENCFF471YCZ 207 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 161 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 214 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 147 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 169 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 168 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 134 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 172 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 134 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 204 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 116 bp overlap
ChIP neural progenitor cell ENCFF420RBO 189 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 252 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 182 bp overlap
ChIP osteocyte ENCFF929FPD 252 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 241 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 160 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE119057.ESR1.MCF-7 151 bp overlap
KDM1A 1 dataset
ChIP K-562 ENCSR908CMW.KDM1A.K-562 200 bp overlap
RAD21 18 datasets
ChIP H1 ENCFF698EWO 205 bp overlap
ChIP H1 ENCFF967OJF 211 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 150 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 208 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 219 bp overlap
ChIP HCT116 ENCFF568PEO 252 bp overlap
ChIP K562 ENCFF634XYR 252 bp overlap
ChIP MCF-7 ENCFF724VCQ 221 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 166 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 176 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 160 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 187 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 156 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 144 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 252 bp overlap
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 252 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 237 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 116 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 154 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 148 bp overlap
SMC1A-B 1 dataset
ChIP TC-32 GSE115250.SMC1A-B.TC-32 168 bp overlap
SMC3 2 datasets
ChIP SK-N-SH ENCFF791WFB 241 bp overlap
ChIP SK-N-SH ENCSR000EHW.SMC3.SK-N-SH 148 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 191 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 148 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 202 bp overlap
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