chr9 : 90,989,895 – 90,990,506
611 bp 14 TFs 0 linked genes
This 611 bp open chromatin element has no linked target genes and is bound by 14 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:90,984,895 – 90,995,506
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
14 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 72 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 250 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 254 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 366 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 375 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 479 bp overlap
ChIP DE DE-FOXA2-2 524 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 611 bp overlap
ChIP DE DE-GATA4-2 611 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 432 bp overlap
GATA6 11 datasets
ChIP AGS GSE51936.GATA6.AGS 188 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 139 bp overlap
ChIP DE DE-GATA6-1 576 bp overlap
ChIP DE DE-GATA6-2 587 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 420 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 480 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 535 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 573 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 474 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 608 bp overlap
JUN 1 dataset
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 216 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 145 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 350 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 586 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 461 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 346 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 71 bp overlap
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