chr9 : 13,424,288 – 13,424,530
242 bp 18 TFs 1 linked gene
This 242 bp open chromatin element is linked to LINC01235 and is bound by 18 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01235 6.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:13,419,288 – 13,429,530
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
18 transcription factors
Source
Cell type
CTCF 64 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 242 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 148 bp overlap
ChIP A673 ENCFF123WOM 242 bp overlap
ChIP C4-2B ENCFF821XVN 242 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 198 bp overlap
ChIP GM23338 ENCFF772DML 64 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 172 bp overlap
ChIP HEK293 ENCFF821TIC 242 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 242 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 101 bp overlap
ChIP HFFc6 ENCFF005CJI 242 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 90 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 160 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 225 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 176 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 183 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 184 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 167 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP HepG2 ENCFF757EKU 242 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 242 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP MCF-7 ENCFF162GNE 232 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF210JUZ 242 bp overlap
ChIP MCF-7 ENCFF414SZG 187 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 242 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 217 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 159 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 128 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 135 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 99 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 187 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 242 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 108 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 159 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 225 bp overlap
ChIP PC-3 ENCFF487TUI 242 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 242 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 242 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 242 bp overlap
ChIP RWPE2 ENCFF911IEE 242 bp overlap
ChIP RWPE2 ENCFF911IEE 193 bp overlap
ChIP VCaP ENCFF858YQT 240 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 242 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 102 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 201 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 235 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 242 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 242 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 186 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 215 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 242 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 132 bp overlap
ChIP liver_right-lobe-of ENCSR911GFJ.CTCF.liver_right-lobe-of 239 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 92 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 146 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 242 bp overlap
ChIP right lobe of liver ENCFF011NDG 242 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 242 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 242 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 242 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 235 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 242 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 242 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 242 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 242 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 237 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 242 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 242 bp overlap
ChIP DE DE-FOXA2-2 242 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 125 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 242 bp overlap
ChIP DE DE-GATA4-2 242 bp overlap
ChIP foregut GSE117136.GATA4.foregut 242 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 222 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 242 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 233 bp overlap
ChIP DE DE-GATA6-2 242 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 242 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 212 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 162 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 155 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 242 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 207 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 202 bp overlap
RAD21 13 datasets
ChIP H1 ENCFF698EWO 239 bp overlap
ChIP H1 ENCFF967OJF 204 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 107 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 238 bp overlap
ChIP Ishikawa ENCFF570JVV 215 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 132 bp overlap
ChIP MCF-7 ENCFF694KOM 242 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 199 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 162 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 150 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 215 bp overlap
ChIP liver ENCFF485PAC 188 bp overlap
ChIP liver ENCFF522JHE 157 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 200 bp overlap
SMC1 3 datasets
ChIP DKO GSE131606.SMC1.DKO 242 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 144 bp overlap
ChIP HMEC-1 GSE101921.SMC1.HMEC-1 122 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE76893.SMC1A.MCF-7 144 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 160 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 113 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 67 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 85 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 242 bp overlap
ChIP K562 ENCFF281INV 242 bp overlap
ZNF572 1 dataset
ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 70 bp overlap
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