chr9 : 9,569,528 – 9,569,956
428 bp 18 TFs 0 linked genes
This 428 bp open chromatin element has no linked target genes and is bound by 18 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:9,564,528 – 9,574,956
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
18 transcription factors
Source
Cell type
CBX1 1 dataset
ChIP DKO GSE135580.CBX1.DKO 291 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 414 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 265 bp overlap
ChIP DE DE-FOXA2-1 341 bp overlap
ChIP DE DE-FOXA2-2 333 bp overlap
GATA1 1 dataset
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 428 bp overlap
ChIP DE DE-GATA4-2 428 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 175 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 400 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 428 bp overlap
ChIP DE DE-GATA6-2 428 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 324 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 428 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 428 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 428 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 309 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 428 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 256 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 191 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 428 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 373 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 271 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 250 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 240 bp overlap
Nr2e1 1 dataset
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
ONECUT3 1 dataset
Motif DE_48h DE_48h-ONECUT3_MA0757.2 12 bp overlap
RBPJ 1 dataset
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
SCRT1 1 dataset
Motif DE_48h DE_48h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_48h DE_48h-SCRT2_MA0744.3 10 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 428 bp overlap
STAT3 1 dataset
Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 284 bp overlap
ZNF416 1 dataset
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap
ZNF75A 1 dataset
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
Zfp809 1 dataset
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
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