chr9 : 3,520,677 3,520,854
177 bp 13 TFs 3 linked genes
This 177 bp open chromatin element is linked to RFX3, ENSG00000288963, and RFX3-DT and is bound by 13 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
RFX3 5.1 kb Proximal Proximity
ENSG00000288963 5.2 kb Proximal Proximity
RFX3-DT 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:3,515,677 – 3,525,854
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 177 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 55 bp overlap
HNF4A 2 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 175 bp overlap
ChIP HepG2 ENCFF146SSF 177 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 177 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 177 bp overlap
SIX1 2 datasets
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 177 bp overlap
ChIP HepG2 ENCFF587VYG 177 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 154 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 143 bp overlap
SIX4 1 dataset
ChIP HepG2 ENCFF372NPG 177 bp overlap
ZKSCAN1 2 datasets
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 62 bp overlap
ChIP K562 ENCFF977CBA 138 bp overlap
ZMYM3 1 dataset
ChIP GM12878 GSE97661.ZMYM3.GM12878 108 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap