chr1 : 166,158,717 166,159,201
484 bp 12 TFs 3 linked genes
This 484 bp open chromatin element is linked to ENSG00000230898, ENSG00000229588, and FAM78B and is bound by 12 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000230898 5.9 kb Proximal Proximity
ENSG00000229588 6.6 kb Proximal Proximity
FAM78B 7.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:166,153,717 – 166,164,201
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 249 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 384 bp overlap
ChIP DE DE-FOXA2-2 343 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 149 bp overlap
GATA3 2 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 290 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 303 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 469 bp overlap
ChIP DE DE-GATA4-2 484 bp overlap
ChIP foregut GSE117136.GATA4.foregut 472 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 434 bp overlap
ChIP DE DE-GATA6-2 484 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 484 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 484 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 475 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 484 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 462 bp overlap
ChIP foregut GSE117136.GATA6.foregut 407 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 403 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 305 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 400 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 278 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 433 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 289 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 259 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 316 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 209 bp overlap