chr1 : 163,412,354 – 163,412,508
154 bp 12 TFs 0 linked genes
This 154 bp open chromatin element has no linked target genes and is bound by 12 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:163,407,354 – 163,417,508
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
CTCF 132 datasets
ChIP 22Rv1 ENCFF466OXN 154 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 154 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 154 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 121 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 154 bp overlap
ChIP A673 ENCFF123WOM 154 bp overlap
ChIP C4-2B ENCFF821XVN 154 bp overlap
ChIP C4-2B ENCFF821XVN 154 bp overlap
ChIP Caco-2 ENCFF934QYS 154 bp overlap
ChIP D721Med ENCFF513FYD 154 bp overlap
ChIP GM23338 ENCFF531QOI 154 bp overlap
ChIP GM23338 ENCFF772DML 151 bp overlap
ChIP H1 ENCFF230QSV 153 bp overlap
ChIP H1 ENCFF414GZI 154 bp overlap
ChIP H1 ENCFF764RHO 79 bp overlap
ChIP H9 ENCFF152GTF 154 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 154 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 132 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 143 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 154 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 154 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 145 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 154 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 154 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 124 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 154 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 129 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 154 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 154 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 94 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 154 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 146 bp overlap
ChIP HeLa-S3 ENCFF565UFR 148 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 114 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 142 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 120 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 154 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 139 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 127 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 109 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 98 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 154 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 132 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 154 bp overlap
ChIP K562 ENCFF082GOI 154 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 154 bp overlap
ChIP KMS-11 ENCFF853JKX 154 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 154 bp overlap
ChIP LNCAP ENCFF223HIG 154 bp overlap
ChIP LNCAP ENCFF700QXT 154 bp overlap
ChIP Loucy ENCFF359TVQ 154 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 154 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 154 bp overlap
ChIP NCI-H929 ENCFF305JAB 154 bp overlap
ChIP OCI-LY1 ENCFF455ESK 154 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 154 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 154 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 154 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 154 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 141 bp overlap
ChIP PC-3 ENCFF487TUI 154 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 154 bp overlap
ChIP Panc1 ENCFF056JQX 154 bp overlap
ChIP Panc1 ENCFF056JQX 154 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 154 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 154 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 154 bp overlap
ChIP SK-N-SH ENCFF731NJX 154 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 131 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.CTCF.THP-1_PMA_Dex-6h 138 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 154 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 154 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 154 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 154 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 154 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 154 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 154 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 154 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 132 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 154 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 154 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-eGFP-Pam3csk-4h 132 bp overlap
ChIP VCaP ENCFF858YQT 154 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 154 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 135 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 128 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 154 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 112 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 135 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 154 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 154 bp overlap
ChIP brain ENCFF685VRG 154 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 154 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 154 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 130 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 131 bp overlap
ChIP endodermal cell ENCFF471YCZ 154 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 154 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 126 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 154 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 154 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 154 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 154 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 111 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 154 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 123 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 136 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 154 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 145 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 138 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 154 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 142 bp overlap
ChIP islet ERP004003.CTCF.islet 154 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 117 bp overlap
ChIP nephron ENCFF589HXU 154 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 154 bp overlap
ChIP neural cell ENCFF335ADI 154 bp overlap
ChIP neural progenitor cell ENCFF420RBO 154 bp overlap
ChIP neural progenitor cell ENCFF581WPG 154 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 154 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 154 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 154 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 154 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 154 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 154 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 154 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 117 bp overlap
RAD21 35 datasets
ChIP H1 ENCFF698EWO 152 bp overlap
ChIP H1 ENCFF967OJF 154 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 154 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 148 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 116 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 154 bp overlap
ChIP SK-N-SH ENCFF747MAS 154 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 154 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 135 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 154 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-060m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 154 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 154 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 154 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.RAD21.THP-1_siCtrl-NS1-Pam3csk-4h 154 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.RAD21.THP-1_siCtrl-eGFP-Pam3csk-4h 154 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.RAD21.THP-1_siWAPL-NS1-Pam3csk-4h 154 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.RAD21.THP-1_siWAPL-eGFP-Pam3csk-4h 154 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 154 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 154 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 154 bp overlap
ChIP hiPSC_HUES9 GSE106870.RAD21.hiPSC_HUES9 67 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 154 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 103 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 144 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 154 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 154 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 154 bp overlap
ChIP neural cell ENCFF564MOT 139 bp overlap
SMARCA4 6 datasets
ChIP NSC GSE125033.SMARCA4.NSC 130 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 154 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 154 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 154 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 154 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 154 bp overlap
SMARCC1 4 datasets
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 128 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 154 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 154 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCC1.TTC-1240_empty 154 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 154 bp overlap
SMC1A 2 datasets
ChIP A-549 GSE76893.SMC1A.A-549 125 bp overlap
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 134 bp overlap
SMC3 7 datasets
ChIP HeLa GSE126990.SMC3.HeLa 154 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 154 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 154 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 154 bp overlap
ChIP HeLa-Kyoto_WT GSE138405.SMC3.HeLa-Kyoto_WT 154 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 154 bp overlap
ChIP neural cell ENCFF795YGY 154 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 111 bp overlap
STAG1 3 datasets
ChIP CHRF28811 ERP008568.STAG1.CHRF28811 154 bp overlap
ChIP HeLa GSE126990.STAG1.HeLa 154 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 154 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 153 bp overlap
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