chr7 : 39,557,816 39,558,290
474 bp 12 TFs 2 linked genes
This 474 bp open chromatin element is linked to YAE1-DT and YAE1 and is bound by 12 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
YAE1-DT 7.9 kb Proximal Proximity
YAE1 8.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:39,552,816 – 39,563,290
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 379 bp overlap
ChIP DE DE-FOXA2-1 474 bp overlap
ChIP DE DE-FOXA2-2 385 bp overlap
GATA1 3 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 153 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 240 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCFF485YIB 331 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 179 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 474 bp overlap
ChIP DE DE-GATA4-2 474 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 386 bp overlap
ChIP foregut GSE117136.GATA4.foregut 467 bp overlap
GATA6 8 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 102 bp overlap
ChIP DE DE-GATA6-1 474 bp overlap
ChIP DE DE-GATA6-2 474 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 406 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 474 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 365 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 463 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 292 bp overlap
NCOA1 1 dataset
ChIP K-562 ENCSR931HNY.NCOA1.K-562 257 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 337 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 322 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 460 bp overlap
SUZ12 1 dataset
ChIP ProEs GSE59087.SUZ12.ProEs 127 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 198 bp overlap