Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

25 transcription factors

ASCL1 2 datasets

ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 159 bp overlap

ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 220 bp overlap

CRX 4 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 322 bp overlap

ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 234 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 322 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 462 bp overlap

CTCF 1 dataset

ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 290 bp overlap

EBF1 1 dataset

Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap

Ebf4 1 dataset

Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 1363 bp overlap

ChIP DE DE-FOXA2-2 1157 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 1362 bp overlap

ChIP DE DE-GATA4-2 1319 bp overlap

ChIP Hep-G2 GSE135714.GATA4.Hep-G2 286 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 597 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-1 1344 bp overlap

ChIP DE DE-GATA6-2 1308 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 359 bp overlap

HOXC11 2 datasets

Motif DE_60h DE_60h-HOXC11_MA0651.3 11 bp overlap

Motif DE_72h DE_72h-HOXC11_MA0651.3 11 bp overlap

HOXC12 2 datasets

Motif DE_60h DE_60h-HOXC12_MA0906.2 10 bp overlap

Motif DE_72h DE_72h-HOXC12_MA0906.2 10 bp overlap

HOXD11 2 datasets

Motif DE_60h DE_60h-HOXD11_MA0908.2 9 bp overlap

Motif DE_72h DE_72h-HOXD11_MA0908.2 9 bp overlap

HOXD12::ELK1 2 datasets

Motif DE_60h DE_60h-HOXD12ELK1_MA1958.2 13 bp overlap

Motif DE_72h DE_72h-HOXD12ELK1_MA1958.2 13 bp overlap

Hoxa11 2 datasets

Motif DE_60h DE_60h-Hoxa11_MA0911.2 9 bp overlap

Motif DE_72h DE_72h-Hoxa11_MA0911.2 9 bp overlap

IRF6 1 dataset

Motif DE_72h DE_72h-IRF6_MA1509.1 9 bp overlap

MEF2D 2 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 203 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 305 bp overlap

NEUROD1 9 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 1132 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 458 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 514 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 405 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 535 bp overlap

ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 353 bp overlap

ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 227 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 393 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 227 bp overlap

OTX2 1 dataset

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 417 bp overlap

PRDM1 1 dataset

Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 372 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1085 bp overlap

SOX17_M 2 datasets

ChIP DE_D2 DED2-SOX17-M_Batch_II 239 bp overlap

ChIP DE_D2 DED2-SOX17-M_Batch_II 271 bp overlap

SOX8 1 dataset

ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap

TBX20 2 datasets

Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap

Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap

THAP1 2 datasets

Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap

Motif DE_72h DE_72h-THAP1_MA0597.3 8 bp overlap

ZNF214 1 dataset

Motif DE_72h DE_72h-ZNF214_MA1975.2 13 bp overlap

Genome Browser