chr1 : 103,110,676 103,111,100
424 bp 15 TFs 1 linked gene
This 424 bp open chromatin element is linked to COL11A1 and is bound by 15 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
COL11A1 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:103,105,676 – 103,116,100
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 424 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 216 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 252 bp overlap
DPF2 5 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 420 bp overlap
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 424 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 392 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 424 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 424 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 128 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 424 bp overlap
KMT2C 3 datasets
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 424 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 424 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4-T910M 287 bp overlap
KMT2D 3 datasets
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 424 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 412 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4-T910M 424 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 264 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 326 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 320 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 170 bp overlap
RELA 1 dataset
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 144 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 193 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 424 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 424 bp overlap
SMARCC1 6 datasets
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 424 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 424 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 424 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 400 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 424 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 188 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 424 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 424 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 424 bp overlap