chr5 : 55,178,218 55,178,427
209 bp 11 TFs 2 linked genes
This 209 bp open chromatin element is linked to CDC20B and MIR449C and is bound by 11 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CDC20B 5.0 kb Proximal Proximity
MIR449C 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:55,173,218 – 55,183,427
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
11 transcription factors
Source
Cell type
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 192 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 50 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 196 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 209 bp overlap
ChIP DE DE-GATA4-2 209 bp overlap
ChIP foregut GSE117136.GATA4.foregut 209 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 120 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 209 bp overlap
ChIP DE DE-GATA6-2 209 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 82 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 204 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 201 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 113 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 209 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 209 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 209 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 209 bp overlap
ChIP K562 ENCFF875HLX 98 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 55 bp overlap