chr4 : 53,375,113 53,375,690
577 bp 13 TFs 3 linked genes
This 577 bp open chromatin element is linked to FIP1L1, ENSG00000282278, and SCFD2 and is bound by 13 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
FIP1L1 2.0 kb Proximal Proximity
ENSG00000282278 2.1 kb Proximal Proximity
SCFD2 9.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:53,370,113 – 53,380,690
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 144 bp overlap
ChIP K562 ENCFF343XWA 161 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 305 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 312 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 241 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 375 bp overlap
ChIP DE DE-FOXA2-1 523 bp overlap
ChIP DE DE-FOXA2-2 460 bp overlap
GATA4 7 datasets
ChIP A-549 GSE85002.GATA4.A-549 211 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 300 bp overlap
ChIP DE DE-GATA4-1 492 bp overlap
ChIP DE DE-GATA4-2 577 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 344 bp overlap
ChIP foregut GSE117136.GATA4.foregut 540 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 411 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 249 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 173 bp overlap
ChIP DE DE-GATA6-1 577 bp overlap
ChIP DE DE-GATA6-2 577 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 458 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 577 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 387 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 429 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 577 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 483 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 273 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 272 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 512 bp overlap
ChIP foregut GSE117136.GATA6.foregut 266 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 149 bp overlap
KDM1A 6 datasets
ChIP K562 ENCFF128TYE 252 bp overlap
ChIP K562 ENCFF934ZRG 133 bp overlap
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 60 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 82 bp overlap
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 67 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 82 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 120 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 265 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 486 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 415 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 211 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 73 bp overlap
ChIP K562 ENCFF361LXT 134 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 135 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 174 bp overlap