chr1 : 71,836,749 71,837,402
653 bp 13 TFs 1 linked gene
This 653 bp open chromatin element is linked to NEGR1-IT1 and is bound by 13 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NEGR1-IT1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:71,831,749 – 71,842,402
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 93 bp overlap
ChIP VCaP-LTAD_DHT_1nM GSE94577.AR.VCaP-LTAD_DHT_1nM 132 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 334 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 332 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 311 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 285 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 118 bp overlap
MAX 1 dataset
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 279 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 398 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 242 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 299 bp overlap
ChIP hESC GSE18292.NANOG.hESC 112 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 452 bp overlap
SMARCA4 4 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 297 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 307 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 488 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 397 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 277 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 236 bp overlap
SPI1 3 datasets
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 198 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 212 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 176 bp overlap