chr4 : 29,928,027 – 29,928,209
182 bp 12 TFs 0 linked genes
This 182 bp open chromatin element has no linked target genes and is bound by 12 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:29,923,027 – 29,933,209
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 111 bp overlap
CTCF 74 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 182 bp overlap
ChIP A673 ENCFF123WOM 182 bp overlap
ChIP C4-2B ENCFF821XVN 182 bp overlap
ChIP GM23338 ENCFF531QOI 182 bp overlap
ChIP GM23338 ENCFF531QOI 57 bp overlap
ChIP GM23338 ENCFF772DML 151 bp overlap
ChIP H1 ENCFF414GZI 159 bp overlap
ChIP H1 ENCFF764RHO 164 bp overlap
ChIP H9 ENCFF152GTF 128 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 159 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 170 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 182 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 142 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 182 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 165 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 182 bp overlap
ChIP HCT116 ENCFF003KHP 182 bp overlap
ChIP HCT116 ENCFF209YMI 170 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 182 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 181 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 134 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 182 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 91 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 91 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 182 bp overlap
ChIP MCF-7 ENCFF198DQX 154 bp overlap
ChIP MCF-7 ENCFF494VXA 154 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 147 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 144 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 166 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 110 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 142 bp overlap
ChIP NCI-H929 ENCFF305JAB 182 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 182 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 135 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 182 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 147 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 151 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 182 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 124 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 162 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 148 bp overlap
ChIP brain ENCFF163BBN 126 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 156 bp overlap
ChIP chondrocyte ENCFF134ORZ 149 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF038KTR 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF041CKA 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF041CKA 117 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF230SFD 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 121 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF514PNC 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 182 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF883PFA 182 bp overlap
ChIP endodermal cell ENCFF471YCZ 182 bp overlap
ChIP endodermal cell ENCFF471YCZ 109 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 128 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 116 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 140 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 182 bp overlap
ChIP neural cell ENCFF335ADI 182 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 101 bp overlap
ChIP osteocyte ENCFF929FPD 182 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 109 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 73 bp overlap
ESR1 3 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 125 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 120 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 116 bp overlap
MYC 1 dataset
ChIP GEN2-2 GSE70275.MYC.GEN2-2 113 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 182 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 182 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 118 bp overlap
RAD21 29 datasets
ChIP H1 ENCFF698EWO 163 bp overlap
ChIP H1 ENCFF967OJF 168 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 146 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 182 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 182 bp overlap
ChIP HCT116 ENCFF568PEO 105 bp overlap
ChIP HeLa-S3 ENCFF775CHI 168 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 182 bp overlap
ChIP Ishikawa ENCFF570JVV 182 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 144 bp overlap
ChIP MCF-7 ENCFF694KOM 182 bp overlap
ChIP MCF-7 ENCFF724VCQ 154 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 132 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 102 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 161 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 125 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 119 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 151 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 182 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 157 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 77 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 175 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 179 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 182 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 120 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 93 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 182 bp overlap
ChIP neural cell ENCFF564MOT 156 bp overlap
SMC3 2 datasets
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 182 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 182 bp overlap
STAG1 4 datasets
ChIP HeLa GSE126990.STAG1.HeLa 182 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 182 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 182 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 159 bp overlap
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