chr3 : 28,059,223 28,059,586
363 bp 14 TFs 1 linked gene
This 363 bp open chromatin element is linked to LINC01967 and is bound by 14 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01967 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:28,054,223 – 28,064,586
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
14 transcription factors
Source
Cell type
BRD2 4 datasets
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 176 bp overlap
ChIP SUM159PT_JQ1 GSE116879.BRD2.SUM159PT_JQ1 155 bp overlap
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 145 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 164 bp overlap
BRD4 10 datasets
ChIP HCT-15 GSE73319.BRD4.HCT-15 215 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 98 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 153 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 73 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 181 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 191 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 159 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 185 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 185 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 191 bp overlap
EGR1 1 dataset
ChIP HCT116 ENCFF456NPQ 270 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 71 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCFF482NJV 363 bp overlap
ChIP HEK293T ENCFF482NJV 290 bp overlap
NFRKB 2 datasets
ChIP HEK293T ENCFF538OWZ 159 bp overlap
ChIP HEK293T ENCFF538OWZ 362 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 359 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 336 bp overlap
SUPT5H 1 dataset
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 124 bp overlap
Thap11 1 dataset
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 183 bp overlap
YY1 7 datasets
ChIP H1 ENCFF524BTL 210 bp overlap
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 91 bp overlap
ChIP HCT116 ENCFF497ZQZ 150 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 219 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 214 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 100 bp overlap
ChIP NT2/D1 ENCFF999MII 218 bp overlap