chr3 : 23,954,521 23,954,663
142 bp 9 TFs 1 linked gene
This 142 bp open chromatin element is linked to NR1D2 and is bound by 9 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NR1D2 9.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:23,949,521 – 23,959,663
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
9 transcription factors
Source
Cell type
EGR1 1 dataset
ChIP T-HESCs GSE141063.EGR1.T-HESCs 64 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 142 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 142 bp overlap
ChIP DE DE-GATA4-2 142 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 142 bp overlap
ChIP DE DE-GATA6-2 142 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 142 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 90 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 82 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 142 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 142 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 142 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 122 bp overlap
ZNF354C 1 dataset
ChIP K562 ENCFF371JMA 50 bp overlap