chr2 : 106,461,967 – 106,462,189
222 bp 7 TFs 1 linked gene
This 222 bp open chromatin element is linked to RGPD3 and is bound by 7 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RGPD3 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:106,456,967 – 106,467,189
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
7 transcription factors
Source
Cell type
CTCF 98 datasets
ChIP 22Rv1 ENCFF466OXN 222 bp overlap
ChIP 22Rv1 ENCFF466OXN 193 bp overlap
ChIP A549 ENCFF182TCQ 70 bp overlap
ChIP A549 ENCFF434LUY 179 bp overlap
ChIP A549 ENCFF669BWC 222 bp overlap
ChIP C4-2B ENCFF821XVN 222 bp overlap
ChIP C4-2B ENCFF821XVN 222 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 222 bp overlap
ChIP CD14-positive monocyte ENCFF590KQU 203 bp overlap
ChIP GM06990 ENCFF471OQT 222 bp overlap
ChIP GM10266 ENCFF241YYF 177 bp overlap
ChIP GM12872 ENCFF697BYI 207 bp overlap
ChIP GM12873 ENCFF711LOS 222 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM13976 ENCFF896BYT 144 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM23338 ENCFF531QOI 194 bp overlap
ChIP GM23338 ENCFF772DML 91 bp overlap
ChIP H1 ENCFF414GZI 175 bp overlap
ChIP H1 ENCFF764RHO 222 bp overlap
ChIP H9 ENCFF152GTF 222 bp overlap
ChIP HCT116 ENCFF373YMA 222 bp overlap
ChIP HFFc6 ENCFF005CJI 195 bp overlap
ChIP HepG2 ENCFF127KUP 222 bp overlap
ChIP HepG2 ENCFF348BUL 157 bp overlap
ChIP HepG2 ENCFF757EKU 172 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP LNCAP ENCFF700QXT 222 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 162 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 157 bp overlap
ChIP MCF-7 ENCFF139NQI 208 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 189 bp overlap
ChIP MCF-7 ENCFF844STM 156 bp overlap
ChIP MCF-7 ENCFF954TUV 186 bp overlap
ChIP NB4 ENCFF155DNY 187 bp overlap
ChIP NCI-H929 ENCFF305JAB 90 bp overlap
ChIP PC-3 ENCFF487TUI 130 bp overlap
ChIP Panc1 ENCFF056JQX 222 bp overlap
ChIP Panc1 ENCFF056JQX 222 bp overlap
ChIP Peyer's patch ENCFF742AQK 222 bp overlap
ChIP Peyer's patch ENCFF746TCR 194 bp overlap
ChIP Peyer's patch ENCFF828IDE 88 bp overlap
ChIP RWPE2 ENCFF911IEE 222 bp overlap
ChIP RWPE2 ENCFF911IEE 173 bp overlap
ChIP SK-N-SH ENCFF575DMG 222 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 222 bp overlap
ChIP VCaP ENCFF858YQT 222 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 222 bp overlap
ChIP adrenal gland ENCFF678WUB 222 bp overlap
ChIP adrenal gland ENCFF886WNR 131 bp overlap
ChIP body of pancreas ENCFF269EDN 222 bp overlap
ChIP body of pancreas ENCFF438KTE 222 bp overlap
ChIP body of pancreas ENCFF798MEO 222 bp overlap
ChIP brain ENCFF163BBN 222 bp overlap
ChIP brain ENCFF163BBN 125 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 222 bp overlap
ChIP chondrocyte ENCFF134ORZ 222 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 210 bp overlap
ChIP endodermal cell ENCFF471YCZ 222 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 222 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 222 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 222 bp overlap
ChIP esophagus muscularis mucosa ENCFF544GAS 222 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 167 bp overlap
ChIP esophagus squamous epithelium ENCFF571ODZ 222 bp overlap
ChIP esophagus squamous epithelium ENCFF683HYK 222 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 222 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 207 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 205 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 222 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 222 bp overlap
ChIP heart right ventricle ENCFF435TKW 222 bp overlap
ChIP heart right ventricle ENCFF577TID 222 bp overlap
ChIP heart right ventricle ENCFF767XJQ 222 bp overlap
ChIP hepatocyte ENCFF263BLJ 153 bp overlap
ChIP keratinocyte ENCFF046PBT 85 bp overlap
ChIP keratinocyte ENCFF667ULX 222 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 222 bp overlap
ChIP lower lobe of right lung ENCFF092XHT 222 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 222 bp overlap
ChIP neural crest cell ENCFF182LWK 204 bp overlap
ChIP neural progenitor cell ENCFF420RBO 222 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 203 bp overlap
ChIP prostate gland ENCFF655GBO 222 bp overlap
ChIP right atrium auricular region ENCFF696NTN 222 bp overlap
ChIP right lobe of liver ENCFF956UTA 222 bp overlap
ChIP spleen ENCFF604DQF 200 bp overlap
ChIP spleen ENCFF653ONC 222 bp overlap
ChIP testis ENCFF409BGH 208 bp overlap
ChIP thyroid gland ENCFF300RYK 222 bp overlap
ChIP thyroid gland ENCFF631QRY 222 bp overlap
ChIP thyroid gland ENCFF748ICQ 222 bp overlap
ChIP tibial nerve ENCFF755YSO 222 bp overlap
ChIP transverse colon ENCFF594PFO 222 bp overlap
ChIP transverse colon ENCFF653EYS 222 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 222 bp overlap
ChIP upper lobe of right lung ENCFF065JCM 222 bp overlap
NR5A2 1 dataset
ChIP A549 ENCFF834RVE 222 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 196 bp overlap
ChIP H1 ENCFF967OJF 209 bp overlap
ChIP HepG2 ENCFF360ZSW 181 bp overlap
ChIP liver ENCFF522JHE 222 bp overlap
SMC3 1 dataset
ChIP A549 ENCFF079FKB 111 bp overlap
SPI1 1 dataset
ChIP HL-60 ENCFF645GBT 197 bp overlap
STAG1 1 dataset
ChIP HepG2 ENCFF843EBZ 222 bp overlap
ZNF460 1 dataset
ChIP HepG2 ENCFF007NNM 222 bp overlap
Huangfu Lab · Publications · Resources · Contact