chr1 : 33,859,337 33,859,839
502 bp 13 TFs 2 linked genes
This 502 bp open chromatin element is linked to HMGB4 and CSMD2 and is bound by 13 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
HMGB4 2.3 kb Proximal Proximity
CSMD2 305.7 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:33,854,337 – 33,864,839
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 116 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 303 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 283 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 368 bp overlap
ChIP DE DE-FOXA2-2 289 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 502 bp overlap
ChIP DE DE-GATA4-2 502 bp overlap
ChIP foregut GSE117136.GATA4.foregut 401 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 502 bp overlap
ChIP DE DE-GATA6-2 502 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 502 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 357 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 472 bp overlap
ChIP foregut GSE117136.GATA6.foregut 354 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 203 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 502 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 415 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 331 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 337 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 332 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 321 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 165 bp overlap