chr2 : 58,041,707 58,042,131
424 bp 13 TFs 2 linked genes
This 424 bp open chromatin element is linked to ENSG00000287875 and VRK2 and is bound by 13 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000287875 4.6 kb Proximal Proximity
VRK2 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:58,036,707 – 58,047,131
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 136 bp overlap
CTCF 1 dataset
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 417 bp overlap
ChIP DE DE-FOXA2-2 245 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 424 bp overlap
ChIP DE DE-GATA4-2 424 bp overlap
ChIP foregut GSE117136.GATA4.foregut 314 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 253 bp overlap
GATA6 6 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 127 bp overlap
ChIP DE DE-GATA6-1 424 bp overlap
ChIP DE DE-GATA6-2 424 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 350 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 318 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 269 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 121 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 177 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 297 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 227 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 199 bp overlap