chr2 : 58,040,625 58,040,829
204 bp 12 TFs 2 linked genes
This 204 bp open chromatin element is linked to ENSG00000287875 and VRK2 and is bound by 12 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000287875 5.9 kb Proximal Proximity
VRK2 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:58,035,625 – 58,045,829
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 189 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 56 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 183 bp overlap
ChIP DE DE-FOXA2-1 204 bp overlap
ChIP DE DE-FOXA2-2 204 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 204 bp overlap
ChIP DE DE-GATA4-2 204 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 116 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 204 bp overlap
ChIP DE DE-GATA6-2 204 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF771OHZ 204 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 204 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 113 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 204 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 204 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 168 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 112 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 196 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 156 bp overlap