chr2 : 58,038,059 58,038,687
628 bp 13 TFs 2 linked genes
This 628 bp open chromatin element is linked to ENSG00000287875 and VRK2 and is bound by 13 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000287875 8.0 kb Proximal Proximity
VRK2 8.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:58,033,059 – 58,043,687
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 136 bp overlap
CHAMP1 2 datasets
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 159 bp overlap
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 130 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 121 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 628 bp overlap
ChIP DE DE-FOXA2-2 513 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 628 bp overlap
ChIP DE DE-GATA4-2 628 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 180 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 628 bp overlap
ChIP DE DE-GATA6-2 628 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 545 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 628 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 626 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 268 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 56 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 77 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 77 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 113 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 113 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 195 bp overlap
ZNF211 2 datasets
ChIP HEK293 ENCFF839HGM 198 bp overlap
ChIP HEK293 ENCSR365DQH.ZNF211.HEK293 216 bp overlap