chr2 : 54,550,800 54,550,989
189 bp 13 TFs 1 linked gene
This 189 bp open chromatin element is linked to SPTBN1 and is bound by 13 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SPTBN1 7.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:54,545,800 – 54,555,989
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
BRD4 3 datasets
ChIP HT29 GSE73319.BRD4.HT29 87 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 82 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 189 bp overlap
CDK9 1 dataset
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 189 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 128 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 56 bp overlap
GATA4 1 dataset
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 119 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 129 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 161 bp overlap
MED1 2 datasets
ChIP G296S GSE85628.MED1.G296S 62 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 62 bp overlap
MYOG 2 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 128 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 118 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 89 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 189 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 189 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 189 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 189 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 189 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 145 bp overlap
ZC3H13 1 dataset
ChIP HepG2 ENCFF444JZJ 63 bp overlap