chr2 : 48,240,781 48,241,318
537 bp 17 TFs 4 linked genes
This 537 bp open chromatin element is linked to 4 target genes and is bound by 17 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000230773 73.1 kb Distal Multiome
FOXN2 73.6 kb Distal Multiome
PPP1R21 199.7 kb Distal Multiome
STON1 289.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:48,235,781 – 48,246,318
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 326 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 187 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 159 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 395 bp overlap
ChIP DE DE-FOXA2-2 404 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 403 bp overlap
ChIP DE DE-GATA4-2 409 bp overlap
ChIP foregut GSE117136.GATA4.foregut 307 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 412 bp overlap
ChIP DE DE-GATA6-2 432 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 297 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 332 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 305 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 323 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 260 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_60h DE_60h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_72h DE_72h-POU2F1SOX2_MA1962.1 17 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_72h DE_72h-Pou5f1Sox2_MA0142.1 15 bp overlap
RFX7 1 dataset
Motif DE_72h DE_72h-RFX7_MA1554.2 8 bp overlap
Rfx6 1 dataset
Motif DE_72h DE_72h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 320 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 367 bp overlap
THRA 1 dataset
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
ZNF449 1 dataset
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap