The protein encoded by this gene is involved in cell motility. It is expressed in breast tissue and together with other proteins, it forms a complex with BRCA1 and BRCA2, thus is potentially associated with higher risk of breast cancer. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Dec 2008]
Transcription factors with Perturb-seq knockdown data for HMMR. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = HMMR upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of HMMR, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr5:163,273,656–163,274,943 | 186.4 kb | Distal (>10kb) Multiome | 149 | |
| chr5:163,330,258–163,331,560 | 129.6 kb | Distal (>10kb) Multiome | 240 | |
| chr5:163,334,244–163,334,828 | 126.2 kb | Distal (>10kb) Multiome | 66 | |
| chr5:163,340,037–163,340,700 | 120.3 kb | Distal (>10kb) Multiome | 37 | |
| chr5:163,432,842–163,434,227 | 27.2 kb | Distal (>10kb) Multiome | 173 | |
| chr5:163,437,029–163,438,386 | 23.1 kb | Distal (>10kb) Multiome | 946 | |
| chr5:163,451,612–163,452,027 | 8.6 kb | Proximal (<10kb) | 12 | |
| chr5:163,459,472–163,462,155 | 280 bp | At TSS Multiome | 1131 | |
| chr5:163,467,779–163,467,924 | 7.1 kb | Proximal (<10kb) | 50 | |
| chr5:163,502,571–163,503,862 | 42.6 kb | Distal (>10kb) Multiome HiCAR | 479 | |
| chr5:163,505,139–163,506,032 | 45.0 kb | Distal (>10kb) Multiome | 889 | |
| chr5:163,531,300–163,534,247 | 70.9 kb | Distal (>10kb) Multiome | 391 |
Genomic view of the HMMR locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.