Enables cadherin binding activity. Predicted to be involved in microtubule cytoskeleton organization. Predicted to act upstream of or within bicellular tight junction assembly and epithelial cell morphogenesis. Located in bicellular tight junction and plasma membrane. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for CGN. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CGN upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CGN, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:151,254,421–151,255,083 | 256.6 kb | Distal (>10kb) Multiome | 770 | |
| chr1:151,281,008–151,283,557 | 230.0 kb | Distal (>10kb) Multiome | 1121 | |
| chr1:151,327,019–151,328,343 | 183.7 kb | Distal (>10kb) Multiome | 719 | |
| chr1:151,346,796–151,347,793 | 164.1 kb | Distal (>10kb) Multiome | 711 | |
| chr1:151,399,359–151,400,043 | 111.9 kb | Distal (>10kb) Multiome | 776 | |
| chr1:151,458,247–151,459,879 | 52.0 kb | Distal (>10kb) Multiome | 796 | |
| chr1:151,491,747–151,492,512 | 19.2 kb | Distal (>10kb) Multiome | 146 | |
| chr1:151,502,459–151,503,303 | 8.5 kb | Proximal (<10kb) Multiome | 99 | |
| chr1:151,510,863–151,512,136 | 41 bp | At TSS Multiome | 640 | |
| chr1:151,539,661–151,541,320 | 28.9 kb | Distal (>10kb) Multiome | 830 | |
| chr1:151,611,789–151,613,070 | 100.7 kb | Distal (>10kb) Multiome | 761 | |
| chr1:151,721,370–151,721,843 | 210.2 kb | Distal (>10kb) Multiome | 186 | |
| chr1:151,762,987–151,763,859 | 252.1 kb | Distal (>10kb) Multiome | 848 | |
| chr1:151,790,055–151,791,612 | 279.2 kb | Distal (>10kb) Multiome | 953 |
Genomic view of the CGN locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.