Predicted to enable protein kinase binding activity. Predicted to be involved in regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within flagellated sperm motility; regulation of protein kinase activity; and spermatogenesis. Located in plasma membrane. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for CCNYL1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CCNYL1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CCNYL1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:207,473,001–207,473,846 | 238.1 kb | Distal (>10kb) Multiome | 203 | |
| chr2:207,528,862–207,530,966 | 181.7 kb | Distal (>10kb) Multiome | 969 | |
| chr2:207,624,610–207,626,664 | 85.5 kb | Distal (>10kb) Multiome | 1079 | |
| chr2:207,681,149–207,682,035 | 29.9 kb | Distal (>10kb) Multiome | 73 | |
| chr2:207,710,626–207,712,680 | 28 bp | At TSS Multiome | 950 | |
| chr2:207,765,723–207,766,484 | 54.4 kb | Distal (>10kb) Multiome | 343 | |
| chr2:207,766,763–207,771,365 | 58.4 kb | Distal (>10kb) Multiome | 1084 | |
| chr2:207,796,609–207,797,752 | 85.5 kb | Distal (>10kb) Multiome | 545 | |
| chr2:207,800,773–207,801,891 | 89.9 kb | Distal (>10kb) Multiome | 374 | |
| chr2:207,810,355–207,811,806 | 99.6 kb | Distal (>10kb) Multiome | 482 | |
| chr2:207,831,341–207,832,383 | 120.4 kb | Distal (>10kb) Multiome | 217 | |
| chr2:207,847,828–207,848,521 | 136.5 kb | Distal (>10kb) Multiome | 603 | |
| chr2:207,905,345–207,906,166 | 194.2 kb | Distal (>10kb) Multiome | 83 | |
| chr2:207,970,009–207,971,155 | 259.0 kb | Distal (>10kb) Multiome | 256 |
Genomic view of the CCNYL1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.