Predicted to enable chromatin binding activity and methylated histone binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nuclear body. Part of PcG protein complex. Biomarker of glioblastoma. [provided by Alliance of Genome Resources, Apr 2025]
Transcription factors with Perturb-seq knockdown data for CBX6. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CBX6 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CBX6, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr22:38,655,982–38,657,104 | 215.7 kb | Distal (>10kb) Multiome | 698 | |
| chr22:38,681,730–38,682,262 | 190.3 kb | Distal (>10kb) Multiome | 947 | |
| chr22:38,700,377–38,701,744 | 171.2 kb | Distal (>10kb) Multiome | 916 | |
| chr22:38,705,151–38,706,595 | 166.5 kb | Distal (>10kb) Multiome | 821 | |
| chr22:38,755,428–38,756,383 | 116.2 kb | Distal (>10kb) Multiome | 770 | |
| chr22:38,793,674–38,794,378 | 78.1 kb | Distal (>10kb) Multiome | 484 | |
| chr22:38,843,207–38,844,443 | 28.4 kb | Distal (>10kb) Multiome | 585 | |
| chr22:38,866,394–38,866,832 | 5.7 kb | Proximal (<10kb) Multiome | 76 | |
| chr22:38,868,935–38,869,141 | 3.1 kb | Proximal (<10kb) | 257 | |
| chr22:38,870,321–38,870,534 | 1.7 kb | Proximal (<10kb) | 334 | |
| chr22:38,871,208–38,873,237 | 143 bp | At TSS Multiome | 758 | |
| chr22:39,014,028–39,014,530 | 142.0 kb | Distal (>10kb) Multiome | 367 | |
| chr22:39,020,588–39,021,215 | 148.7 kb | Distal (>10kb) Multiome | 149 | |
| chr22:39,040,158–39,041,304 | 168.7 kb | Distal (>10kb) Multiome | 237 | |
| chr22:39,077,158–39,077,634 | 205.1 kb | Distal (>10kb) Multiome | 66 | |
| chr22:39,087,857–39,088,400 | 215.8 kb | Distal (>10kb) Multiome | 32 | |
| chr22:39,144,772–39,146,359 | 273.5 kb | Distal (>10kb) Multiome | 668 | |
| chr22:39,152,016–39,153,700 | 280.5 kb | Distal (>10kb) Multiome | 607 | |
| chr22:39,170,852–39,171,359 | 298.9 kb | Distal (>10kb) Multiome | 425 |
Genomic view of the CBX6 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.