chr18 : 28,181,758 – 28,182,105
347 bp 15 TFs 1 linked gene
This 347 bp open chromatin element is linked to CDH2 and is bound by 15 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CDH2 4.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:28,176,758 – 28,187,105
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 245 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 347 bp overlap
ChIP DE DE-FOXA2-2 347 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 347 bp overlap
ChIP DE DE-GATA4-2 347 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 307 bp overlap
ChIP DE DE-GATA6-2 347 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 335 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 347 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 324 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 347 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 347 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 347 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 298 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 342 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 347 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 296 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 196 bp overlap
ChIP hESC GSE18292.NANOG.hESC 189 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 126 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 312 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 347 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 158 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 325 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 63 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 347 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 347 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 297 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 294 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 311 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 231 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 315 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 347 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 282 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 229 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 346 bp overlap
ChIP hESC GSE18292.SOX2.hESC 97 bp overlap
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