chr13 : 53,161,351 53,161,507
156 bp 12 TFs 1 linked gene
This 156 bp open chromatin element is linked to LINC01065 and is bound by 12 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01065 9.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:53,156,351 – 53,166,507
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 156 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 156 bp overlap
ChIP DE DE-GATA4-2 156 bp overlap
ChIP foregut GSE117136.GATA4.foregut 144 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 156 bp overlap
ChIP DE DE-GATA6-2 156 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 156 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 156 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 156 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 156 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 156 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 156 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 156 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 156 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 156 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 156 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 156 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 156 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 156 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 154 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 156 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 146 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 156 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 156 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 156 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 75 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 156 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 131 bp overlap