chr6 : 64,990,778 – 64,991,131
353 bp 18 TFs 0 linked genes
This 353 bp open chromatin element has no linked target genes and is bound by 18 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:64,985,778 – 64,996,131
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
18 transcription factors
Source
Cell type
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 290 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 183 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 190 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 245 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 192 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 174 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 174 bp overlap
FOXA1 96 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 283 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 220 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 323 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 200 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 225 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 250 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 281 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 245 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 256 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 288 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 261 bp overlap
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 223 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 256 bp overlap
ChIP 22Rv1_ab GSE129951.FOXA1.22Rv1_ab 258 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 247 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 251 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 257 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 271 bp overlap
ChIP HEK293_v5_TFS GSE123618.FOXA1.HEK293_v5_TFS 226 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 221 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 179 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 237 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 150 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 194 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 112 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 125 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 185 bp overlap
ChIP LNCaP_DMSO GSE114274.FOXA1.LNCaP_DMSO 182 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 155 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 267 bp overlap
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 174 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 118 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 211 bp overlap
ChIP LNCaP_UPF1069 GSE114274.FOXA1.LNCaP_UPF1069 172 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 59 bp overlap
ChIP MCF-7 ENCFF465LTH 286 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 259 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 260 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 221 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 168 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 164 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 164 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 160 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 156 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 170 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.FOXA1.MCF-7_ARID1A-KO 184 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 171 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 162 bp overlap
ChIP MCF-7_DSG GSE114737.FOXA1.MCF-7_DSG 150 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 233 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 191 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 214 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 185 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 225 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 200 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 233 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 221 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 255 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 182 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 236 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 227 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 176 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 272 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 216 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 235 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 243 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 269 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 216 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 229 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 179 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 158 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 211 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 141 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 154 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 228 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 298 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 215 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 238 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 246 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 181 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 191 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 198 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 187 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 200 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 220 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 246 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 260 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 262 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 210 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 166 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 208 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 172 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 298 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 228 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 181 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 174 bp overlap
FOXA2 12 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 192 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 192 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 173 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 233 bp overlap
ChIP DE DE-FOXA2-1 353 bp overlap
ChIP DE DE-FOXA2-2 353 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 277 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 353 bp overlap
ChIP PC-3_Veh GSE148982.FOXA2.PC-3_Veh 193 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 225 bp overlap
ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 222 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 335 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 353 bp overlap
ChIP DE DE-GATA4-2 353 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 347 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 353 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 353 bp overlap
ChIP DE DE-GATA6-2 353 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 348 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 353 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 197 bp overlap
NUP98-HOXA9 1 dataset
ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 93 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 353 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 351 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 253 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 167 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 84 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 353 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 218 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 195 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 190 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 247 bp overlap
TFAP4 1 dataset
ChIP LNCaP GSE28857.TFAP4.LNCaP 299 bp overlap
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