chr5 : 135,859,255 135,860,157
902 bp 15 TFs 2 linked genes
This 902 bp open chromatin element is linked to SMAD5 and SLC25A48 and is bound by 15 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
SMAD5 273.1 kb Distal Multiome
SLC25A48 280.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:135,854,255 – 135,865,157
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 230 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF346MCV 309 bp overlap
ChIP BLaER1 ENCFF364PUR 345 bp overlap
ChIP BLaER1 ENCFF896HSY 265 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 127 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 152 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 385 bp overlap
ChIP DE DE-FOXA2-2 376 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 504 bp overlap
ChIP DE DE-GATA4-2 780 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 415 bp overlap
ChIP DE DE-GATA6-2 227 bp overlap
ChIP DE DE-GATA6-2 479 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 471 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 698 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 558 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 902 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 595 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 504 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 334 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 356 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 223 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 699 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 550 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 594 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 896 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 179 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 553 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 902 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 902 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 234 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 332 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 241 bp overlap
ZNF431 2 datasets
ChIP K562 ENCFF431VZH 269 bp overlap
ChIP K562 ENCFF431VZH 468 bp overlap