chr5 : 39,884,561 39,884,913
352 bp 14 TFs 0 linked genes
This 352 bp open chromatin element has no linked target genes and is bound by 14 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:39,879,561 – 39,889,913
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
14 transcription factors
Source
Cell type
CTCF 16 datasets
ChIP AG04450 ENCFF116DJL 297 bp overlap
ChIP D721Med ENCFF513FYD 211 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 174 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 134 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 132 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 227 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 194 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 101 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 274 bp overlap
ChIP chondrocyte ENCFF134ORZ 352 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 122 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 187 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 96 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 235 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 135 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 352 bp overlap
ChIP DE DE-FOXA2-2 352 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 174 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 352 bp overlap
ChIP DE DE-GATA4-2 352 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 352 bp overlap
ChIP DE DE-GATA6-2 352 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 352 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 297 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 352 bp overlap
ChIP foregut GSE117136.GATA6.foregut 242 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 122 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 126 bp overlap
RAD21 2 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 123 bp overlap
ChIP HeLa-S3 ENCFF775CHI 231 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 225 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 352 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 198 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 177 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 238 bp overlap