chr4 : 170,227,932 – 170,228,228
296 bp 10 TFs 1 linked gene
This 296 bp open chromatin element is linked to LINC01612 and is bound by 10 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01612 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:170,222,932 – 170,233,228
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
10 transcription factors
Source
Cell type
CTCF 143 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 219 bp overlap
ChIP A549 ENCFF034FVO 245 bp overlap
ChIP BE2C ENCFF757SRF 248 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 204 bp overlap
ChIP Calu3 ENCFF526MDS 296 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 209 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 164 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 243 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 118 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 111 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 132 bp overlap
ChIP GM12873 ENCFF711LOS 222 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 221 bp overlap
ChIP H9 ENCFF152GTF 207 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 215 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 221 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 265 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 141 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 198 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 190 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 221 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 215 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 212 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 192 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 296 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 193 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 155 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 258 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 265 bp overlap
ChIP HCT116 ENCFF003KHP 245 bp overlap
ChIP HCT116 ENCFF209YMI 235 bp overlap
ChIP HEK293 ENCFF498RMM 183 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 133 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 177 bp overlap
ChIP HMS001 GSE143026.CTCF.HMS001 99 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 69 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 154 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 204 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 225 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 174 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 151 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 161 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 150 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 155 bp overlap
ChIP HepG2 ENCFF127KUP 197 bp overlap
ChIP HepG2 ENCFF194VBQ 233 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 137 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 115 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 119 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 136 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 162 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 126 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 185 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 188 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 276 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 147 bp overlap
ChIP MCF-7 ENCFF139NQI 232 bp overlap
ChIP MCF-7 ENCFF198DQX 210 bp overlap
ChIP MCF-7 ENCFF494VXA 210 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 195 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 193 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 164 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 156 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 137 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 210 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 241 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 168 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 226 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 273 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 114 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 116 bp overlap
ChIP SK-N-SH ENCFF575DMG 296 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 256 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 81 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 296 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 296 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 174 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 267 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 163 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 296 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 189 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 172 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 142 bp overlap
ChIP brain ENCFF685VRG 296 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 244 bp overlap
ChIP chondrocyte ENCFF134ORZ 296 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 246 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 189 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 296 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 292 bp overlap
ChIP endodermal cell ENCFF471YCZ 233 bp overlap
ChIP endothelial cell ENCFF663LIE 296 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 233 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 272 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 296 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 267 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 178 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 183 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 248 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 172 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 168 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 235 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 101 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 296 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 296 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 142 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 296 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 296 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 123 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 167 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 135 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 161 bp overlap
ChIP islet ERP004003.CTCF.islet 185 bp overlap
ChIP keratinocyte ENCFF667ULX 252 bp overlap
ChIP keratinocyte ENCFF805QIE 296 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 285 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 268 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 259 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 273 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 186 bp overlap
ChIP liver_right-lobe-of ENCSR911GFJ.CTCF.liver_right-lobe-of 147 bp overlap
ChIP lung ENCSR463XCZ.CTCF.lung 172 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 292 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 217 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 173 bp overlap
ChIP neural crest cell ENCFF182LWK 296 bp overlap
ChIP neural progenitor cell ENCFF420RBO 120 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 197 bp overlap
ChIP placenta ENCFF029PHY 296 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 296 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 179 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 296 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 202 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 294 bp overlap
ChIP smooth muscle cell ENCFF656FBT 296 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 165 bp overlap
ChIP testis ENCSR981CID.CTCF.testis 208 bp overlap
ChIP transverse colon ENCFF594PFO 296 bp overlap
ChIP transverse colon ENCFF653EYS 276 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 126 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 122 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 174 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 296 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 121 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 133 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 287 bp overlap
STAG1 1 dataset
ChIP MCF-7 ERP000209.STAG1.MCF-7 140 bp overlap
YY1 3 datasets
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 152 bp overlap
ChIP HCT116 ENCFF497ZQZ 205 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 115 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 178 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 257 bp overlap
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