chr1 : 78,214,003 78,214,778
775 bp 12 TFs 3 linked genes
This 775 bp open chromatin element is linked to DNAJB4, FUBP1, and NEXN and is bound by 12 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
DNAJB4 235.2 kb Distal Multiome
FUBP1 235.4 kb Distal Multiome
NEXN 326.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:78,209,003 – 78,219,778
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 221 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 489 bp overlap
ChIP DE DE-FOXA2-2 466 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 363 bp overlap
ChIP DE DE-GATA4-2 556 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 350 bp overlap
ChIP DE DE-GATA6-2 453 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 175 bp overlap
KLF4 1 dataset
ChIP WIBR3 GSE130417.KLF4.WIBR3 127 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 174 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 194 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 775 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 739 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 130 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 626 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 696 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 216 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 274 bp overlap