chr4 : 98,251,092 98,251,438
346 bp 12 TFs 2 linked genes
This 346 bp open chromatin element is linked to ENSG00000289532 and RAP1GDS1 and is bound by 12 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000289532 9.8 kb Proximal Proximity
RAP1GDS1 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:98,246,092 – 98,256,438
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 80 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 126 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 280 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 346 bp overlap
ChIP DE DE-FOXA2-2 346 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 311 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 346 bp overlap
ChIP DE DE-GATA4-2 346 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 323 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 346 bp overlap
ChIP DE DE-GATA6-2 346 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 346 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 346 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 346 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 346 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 346 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 346 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 346 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 287 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 225 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 113 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 237 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 317 bp overlap