chr19 : 23,420,932 23,421,175
243 bp 7 TFs 1 linked gene
This 243 bp open chromatin element is linked to LINC01224 and is bound by 7 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01224 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:23,415,932 – 23,426,175
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
7 transcription factors
Source
Cell type
CTCF 25 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 156 bp overlap
ChIP GM23338 ENCFF531QOI 243 bp overlap
ChIP GM23338 ENCFF772DML 139 bp overlap
ChIP H1 ENCFF414GZI 198 bp overlap
ChIP H1 ENCFF764RHO 226 bp overlap
ChIP H9 ENCFF152GTF 146 bp overlap
ChIP HepG2 ENCFF757EKU 243 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 161 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 226 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 159 bp overlap
ChIP Panc1 ENCFF056JQX 243 bp overlap
ChIP Panc1 ENCFF056JQX 243 bp overlap
ChIP RWPE2 ENCFF911IEE 243 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 100 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 135 bp overlap
ChIP endodermal cell ENCFF471YCZ 142 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 144 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 142 bp overlap
ChIP keratinocyte ENCFF046PBT 151 bp overlap
ChIP keratinocyte ENCFF291YDC 173 bp overlap
ChIP keratinocyte ENCFF667ULX 219 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 200 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 189 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 243 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 159 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 225 bp overlap
ChIP BLaER1 ENCFF274GAT 81 bp overlap
GATA4 1 dataset
ChIP foregut GSE117136.GATA4.foregut 240 bp overlap
GATA6 1 dataset
ChIP foregut GSE117136.GATA6.foregut 243 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 193 bp overlap
ChIP HepG2 ENCFF360ZSW 175 bp overlap
ChIP HepG2 ENCFF906QIS 177 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 142 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 190 bp overlap
STAG1 3 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 173 bp overlap
ChIP HepG2 ENCFF843EBZ 242 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 141 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 157 bp overlap