chr18 : 59,176,733 59,177,291
558 bp 9 TFs 2 linked genes
This 558 bp open chromatin element is linked to SEC11C and LMAN1 and is bound by 9 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SEC11C 37.1 kb Distal Multiome
LMAN1 182.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:59,171,733 – 59,182,291
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
9 transcription factors
Source
Cell type
FOXA1 1 dataset
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 225 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 420 bp overlap
ChIP DE DE-GATA4-2 525 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 429 bp overlap
ChIP DE DE-GATA6-2 403 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 372 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 519 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 442 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 376 bp overlap
HMGA1 1 dataset
ChIP IMR-90_RAS-induced GSE111841.HMGA1.IMR-90_RAS-induced 197 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 297 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 192 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 548 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 321 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 558 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 558 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 302 bp overlap