This gene encodes a protein with an N-terminal pleckstrin homology domain and a C-terminal coiled-coil region. The protein interacts with trio, which is involved with neural tissue development and controlling actin cytoskeleton organization, cell motility and cell growth. The protein also associates with F-actin and stabilizes F-actin structures. Mutations in this gene have been associated with a form of autosomal recessive nonsyndromic deafness. Multiple alternatively spliced transcript variants that would encode different isoforms have been found for this gene, however some transcripts may be subject to nonsense-mediated decay (NMD). [provided by RefSeq, Nov 2008]
Transcription factors with Perturb-seq knockdown data for TRIOBP. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TRIOBP upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TRIOBP, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr22:37,419,824–37,420,580 | 276.8 kb | Distal (>10kb) Multiome | 150 | |
| chr22:37,518,831–37,519,884 | 177.6 kb | Distal (>10kb) Multiome | 548 | |
| chr22:37,545,569–37,546,885 | 150.7 kb | Distal (>10kb) Multiome | 682 | |
| chr22:37,559,893–37,560,965 | 136.7 kb | Distal (>10kb) Multiome | 589 | |
| chr22:37,569,013–37,570,549 | 127.5 kb | Distal (>10kb) Multiome | 695 | |
| chr22:37,608,044–37,609,455 | 88.3 kb | Distal (>10kb) Multiome | 920 | |
| chr22:37,639,157–37,639,951 | 57.5 kb | Distal (>10kb) Multiome | 427 | |
| chr22:37,658,172–37,659,508 | 38.5 kb | Distal (>10kb) Multiome | 722 | |
| chr22:37,674,916–37,675,641 | 21.6 kb | Distal (>10kb) Multiome | 607 | |
| chr22:37,676,590–37,677,674 | 19.8 kb | Distal (>10kb) Multiome | 655 | |
| chr22:37,686,104–37,686,784 | 10.6 kb | Distal (>10kb) Multiome | 866 | |
| chr22:37,696,496–37,697,685 | 143 bp | At TSS Multiome | 428 | |
| chr22:37,745,641–37,746,995 | 49.1 kb | Distal (>10kb) Multiome | 627 | |
| chr22:37,751,834–37,752,124 | 5.6 kb | Proximal (<10kb) | 62 | |
| chr22:37,802,124–37,802,989 | 105.4 kb | Distal (>10kb) Multiome | 603 | |
| chr22:37,804,679–37,805,768 | 108.2 kb | Distal (>10kb) Multiome | 763 | |
| chr22:37,807,436–37,808,267 | 110.8 kb | Distal (>10kb) Multiome | 766 | |
| chr22:37,817,672–37,819,114 | 120.8 kb | Distal (>10kb) Multiome | 713 | |
| chr22:37,824,524–37,825,593 | 127.9 kb | Distal (>10kb) Multiome | 173 | |
| chr22:37,843,748–37,844,743 | 147.4 kb | Distal (>10kb) Multiome | 798 | |
| chr22:37,849,215–37,849,709 | 152.3 kb | Distal (>10kb) Multiome | 753 | |
| chr22:37,905,849–37,906,846 | 209.2 kb | Distal (>10kb) Multiome | 552 | |
| chr22:37,933,777–37,934,256 | 237.0 kb | Distal (>10kb) Multiome | 679 | |
| chr22:37,953,153–37,954,120 | 256.6 kb | Distal (>10kb) Multiome | 617 | |
| chr22:37,983,021–37,985,110 | 287.4 kb | Distal (>10kb) Multiome | 228 |
Genomic view of the TRIOBP locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.