Predicted to enable DNA binding activity; translation elongation factor activity; and zinc ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within erythrocyte differentiation and positive regulation of DNA-templated transcription. Located in nucleolus and nucleoplasm. Part of transcription factor TFIID complex. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for TCEA1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TCEA1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TCEA1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr8:53,766,492–53,767,096 | 255.6 kb | Distal (>10kb) Multiome | 118 | |
| chr8:53,842,551–53,843,618 | 179.2 kb | Distal (>10kb) Multiome | 936 | |
| chr8:53,879,185–53,882,655 | 142.4 kb | Distal (>10kb) Multiome | 721 | |
| chr8:54,021,584–54,023,157 | 67 bp | At TSS Multiome | 965 | |
| chr8:54,101,305–54,102,633 | 79.6 kb | Distal (>10kb) Multiome | 744 | |
| chr8:54,134,624–54,135,508 | 112.9 kb | Distal (>10kb) Multiome | 807 | |
| chr8:54,223,881–54,225,934 | 202.8 kb | Distal (>10kb) Multiome | 303 | |
| chr8:54,259,099–54,260,380 | 237.7 kb | Distal (>10kb) Multiome | 139 | |
| chr8:54,267,801–54,269,212 | 246.1 kb | Distal (>10kb) Multiome | 253 | |
| chr8:54,300,265–54,301,003 | 278.4 kb | Distal (>10kb) Multiome | 195 | |
| chr8:54,301,815–54,302,560 | 279.9 kb | Distal (>10kb) Multiome | 136 |
Genomic view of the TCEA1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.