Predicted to be involved in phospholipid translocation and retrograde transport, endosome to Golgi. Predicted to be located in cytosol and membrane. Predicted to be active in endosome and trans-Golgi network. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for SLC66A2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SLC66A2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SLC66A2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr18:79,678,750–79,680,983 | 272.2 kb | Distal (>10kb) Multiome | 955 | |
| chr18:79,797,637–79,799,132 | 153.6 kb | Distal (>10kb) Multiome | 246 | |
| chr18:79,943,043–79,943,369 | 8.3 kb | Proximal (<10kb) | 89 | |
| chr18:79,950,747–79,952,381 | 44 bp | At TSS Multiome | 606 | |
| chr18:79,953,017–79,953,386 | 1.4 kb | Proximal (<10kb) | 63 | |
| chr18:79,960,055–79,960,750 | 8.8 kb | Proximal (<10kb) Multiome | 94 | |
| chr18:79,964,253–79,964,855 | 12.9 kb | Distal (>10kb) Multiome | 536 | |
| chr18:79,988,046–79,989,235 | 36.9 kb | Distal (>10kb) Multiome | 832 | |
| chr18:80,033,036–80,034,844 | 82.5 kb | Distal (>10kb) Multiome | 863 | |
| chr18:80,108,658–80,110,068 | 157.4 kb | Distal (>10kb) Multiome | 673 | |
| chr18:80,119,162–80,119,666 | 167.7 kb | Distal (>10kb) Multiome | 42 | |
| chr18:80,147,532–80,148,374 | 196.2 kb | Distal (>10kb) Multiome | 357 | |
| chr18:80,245,958–80,247,961 | 294.8 kb | Distal (>10kb) Multiome | 405 |
Genomic view of the SLC66A2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.